GINsim
Qualitative analysis of regulatory graphs: a computational tool based on a discrete formal framework
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CELL CYCLE
Yeast Cell Cycle
Mammalian cell-cycle
boolean_cell_cycle.ginml
ERBB S/G1
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CELL_CYCLE_REVIEW
Mammalian cell-cycle
mammalsFaure2006.zginml
Drosophila Cell Cycle
drosophilaCellCycleVariants.zginml
Budding Yeast Cell Cycle, Orlando et al., 2008
buddingYeastOrlando2008.zginml
Budding Yeast Cell Cycle : Irons, 2009
buddingYeastIrons2009.zginml
Fission Yeast Cell Cycle, adapted from Davidich and Bornholdt, 2008
fissionYeastDavidich2008Modified.zginml
fissionYeastDavidich2008.zginml
Budding Yeast Cell Cycle, adapted from Li et al., 2004.
buddingYeastLi2004Modified.zginml
buddingYeastLi2004.zginml
Cell Cycle Review
DROSOPHILA DEVELOPMENT
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Segmentation
The Gap model
gapA.ginml
gapB.ginml
gapC.ginml
gapD.ginml
The Pair Rule model
pairRule.ginml
Segment Polarity
SP_1cell.zginml
SP_6cells.zginml
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Wing imaginal disk
AP Boundary
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DV Boundary
Apterous dependent network
ap-1_else-0_wt.ginml
Full network
dv_boundary_wing_disk_model.ginml
MAMMALIAN REGULATORY NETWORKS
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T lymphocytes
The control of Th1/2 cell differentiation
ThBoolean.ginml
Th_17.ginml
Th_BRPN.pnt
Th_MRPN.pnt
TCR signalisation
TCRsig40.ginml
Control of Th1/Th2/Th17/Treg cells differentiation
Th_differentiation_full_annotated_model.zginml
Th_differentiation_reduced_model.zginml
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Cell cycle
Mammalian cell-cycle
boolean_cell_cycle.ginml
ERBB S/G1
MICROBIOLOGICAL REGULATORY NETWORKS
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Tryptophan biosynthesis in E.Coli
Logical model for the regulation of the tryptophan biosynthesis
E.Coli
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Phage Lambda
Lysis-lysogeny decision in the bacteriophage lambda
MISCELLANEOUS
Flowering in Arabidopsis
arabidopsis.ginml
Neuron differentiation in Zebra Fish
